Results for
""Sequence Alignment""[mesh_terms]

Prediction of antimicrobial peptides based on sequence alignment and feature selection methods.

Ping Wang, Lele Hu, Guiyou Liu, Nan Jiang, Xiaoyun Chen, Jianyong Xu, Wen Zheng, Li Li, Ming Tan, Zugen Chen, Hui Song, Yu-Dong Cai, Kuo-Chen Chou

PloS one 2011;6(4):e18476

Estimation of biomass composition from genomic and transcriptomic information.

Isabel Rocha, Sophia Santos

Journal of integrative bioinformatics 2017;13(2):285

Classification of domains in predicted structures of the human proteome.

Qian Cong, Jimin Pei, Lisa N Kinch, Jing Zhang, R Dustin Schaeffer, Nick V Grishin

Proceedings of the National Academy of Sciences of the United States of America 2023;120(12):e2214069120

Fully Automated Ancestral Sequence Reconstruction using FireProt.

Rayyan Tariq Khan, Milos Musil, Jan Stourac, Jiri Damborsky, David Bednar

Current protocols 2021;1(2):e30

Predicting enzyme class from protein structure without alignments.

Paul D Dobson, Andrew J Doig

Journal of molecular biology 2005;345(1):187-99

Machine Learning Directed Aptamer Search from Conserved Primary Sequences and Secondary Structures.

Juewen Liu, Apurva Narayan, Runjhun Saran Narayan, Yuzhe Ding, Po-Jung Jimmy Huang, Javier Perez Tobia

ACS synthetic biology 2023;12(1):186-195

The Structural Determinants of Intra-Protein Compensatory Substitutions.

Shilpi Chaurasia, Julien Y Dutheil

Molecular biology and evolution 2022;39(4):msac063

PPalign: optimal alignment of Potts models representing proteins with direct coupling information.

François Coste, Hugo Talibart

BMC bioinformatics 2021;22(1):317

Discovery of deoxyribonuclease II-like proteins in bacteria.

Muhittin Arslanyolu, Erhan Aslan

Molecular phylogenetics and evolution 2022;174():107554

Where did the BLOSUM62 alignment score matrix come from?

Sean R Eddy

Nature biotechnology 2005;22(8):1035-6

Technology dictates algorithms: recent developments in read alignment.

Serghei Mangul, Onur Mutlu, Can Alkan, Alex Zelikovsky, Pavel Skums, David Koslicki, Brunilda Balliu, Benjamin D Singer, Sergey Knyazev, Victor Xue, Harry Taegyun Yang, Pelin Icer Baykal, Huwenbo Shi, Dhrithi Deshpande, Mohammed Alser, Kodi Taraszka, Jeremy Rotman

Genome biology 2022;22(1):249

UPSEC: an algorithm for classifying unaligned protein sequences into functional families.

Patrick C H Ma, Keith C C Chan

Journal of computational biology : a journal of computational molecular cell biology 2008;15(4):431-43

Improving the accuracy of template-based predictions by mixing and matching between initial models.

Tianyun Liu, Michal Guerquin, Ram Samudrala

BMC structural biology 2008;8():24

Aryana-bs: context-aware alignment of bisulfite-sequencing reads.

Govindarajan Kunde-Ramamoorthy, Hamidreza Chitsaz, Farzane Rasti, Saeedeh Ezzati, Afsoon Afzal, Ali Sharifi-Zarchi, Hassan Nikaein

BMC bioinformatics 2025;26(1):188