Filters

Clear all

Expert Opinion

Plain Language Summary

Expert Review

Text Availability

Abstract

Full text

Free full text

Publication Types

Journal Article

Research Support, Non-U.S. Gov't

Research Support, N.I.H., Extramural

Comparative Study

Research Support, U.S. Gov't, Non-P.H.S.

Review

Research Support, U.S. Gov't, P.H.S.

Research Support, N.I.H., Intramural

Publication Year

From

Quick links

Individual year

2021

2019

2017

2016

2009

2008

2007

2003

2002

2001

2000

Sort by:

selected

Print page

Email selected articles

Favourite selected articles

Create a NED Search Alert for this search

Save this search

Advanced Search

Run an advanced search

Results for
""DNA Footprinting""[mesh_terms]

19 Results

Searching titles within these results

Human Mitochondrial Transcription Factor B2 Is Required for Promoter Melting during Initiation of Transcription.

Viktor Posse, Claes M Gustafsson

The Journal of biological chemistry 2017;292(7):2637-2645

Free Full Text

Abstract

Unusually strong binding to the DNA minor groove by a highly twisted benzimidazole diphenylether: induced fit and bound water.

Farial A Tanious, William Laine, Paul Peixoto, Christian Bailly, Kristie D Goodwin, Mark A Lewis, Eric C Long, Millie M Georgiadis, Richard R Tidwell, W David Wilson

Biochemistry 2007;46(23):6944-56

Free Full Text

Abstract

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

Zehua Chen, Karen A Lewis, Ryan K Shultzaberger, Ilya G Lyakhov, Ming Zheng, Bernard Doan, Gisela Storz, Thomas D Schneider

Nucleic acids research 2007;35(20):6762-77

Free Full Text

Abstract

Footprinting: a method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands.

Keith R Fox, Victoria J Broughton-Head, David A Rusling, Andrew J Hampshire

Methods (San Diego, Calif.) 2007;42(2):128-40

Full Text

Abstract

Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.

Daria A Gaykalova, Alexey K Shaytan, Hua Xiao, Grigoriy A Armeev, Galina A Komarova, Carl Wu, Vasily M Studitsky, David Landsman, Anna R Panchenko

Nature protocols 2019;13(11):2535-2556

Free Full Text

Abstract

Identification of regulatory elements by gene family footprinting and in vivo analysis.

Claude Backendorf, David F Fischer

Advances in biochemical engineering/biotechnology 2007;104():37-64

Full Text

Abstract

Analysis of RNA polymerase-promoter complex formation.

Richard L Gourse, Wilma Ross

Methods (San Diego, Calif.) 2009;47(1):13-24

Free Full Text

Abstract

Nucleosome organization on Kluyveromyces lactis centromeric DNAs.

Maria Savino, Pasquale De Santis, Beatrice Sampaolese, Sonia Mattei

Biophysical chemistry 2002;97(2-3):173-87

Full Text

Abstract

The Escherichia coli RNA polymerase.anti-sigma 70 AsiA complex utilizes alpha-carboxyl-terminal domain upstream promoter contacts to transcribe from a -10/-35 promoter.

G Orsini, A Kolb, H Buc

The Journal of biological chemistry 2001;276(23):19812-9

Free Full Text

Abstract

Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome.

R U Protacio, G Li, P T Lowary, J Widom

Molecular and cellular biology 2000;20(23):8866-78

Free Full Text

Abstract

Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.

Robert Reichelt, Antonia Gindner, Michael Thomm, Winfried Hausner

BMC genomics 2016;17():40

Free Full Text

Abstract

Physical and structural basis for the strong interactions of the -ImPy- central pairing motif in the polyamide f-ImPyIm.

Karen L Buchmueller, Suzanna L Bailey, David A Matthews, Zarmeen T Taherbhai, Janna K Register, Zachary S Davis, Chrystal D Bruce, Caroline O'Hare, John A Hartley, Moses Lee

Biochemistry 2007;45(45):13551-65

Full Text

Abstract

Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.

S Y Gerdes, M D Scholle, J W Campbell, G Balázsi, E Ravasz, M D Daugherty, A L Somera, N C Kyrpides, I Anderson, M S Gelfand, A Bhattacharya, V Kapatral, M D'Souza, M V Baev, Y Grechkin, F Mseeh, M Y Fonstein, R Overbeek, A-L Barabási, Z N Oltvai, A L Osterman

Journal of bacteriology 2003;185(19):5673-84

Free Full Text

Abstract

Using an L7Ae-Tethered, Hydroxyl Radical-Mediated Footprinting Strategy to Identify and Validate Kink-Turns in RNAs.

Stella M Lai, Venkat Gopalan

Methods in molecular biology (Clifton, N.J.) 2021;2167():147-169

Full Text

Abstract

A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1.

Christof Francke, Robert Kerkhoven, Michiel Wels, Roland J Siezen

BMC genomics 2008;9():145

Free Full Text

Abstract

Results: 1 – 15 / 19

Filters

Expert Opinion

Text Availability

Publication Types

Publication Year

Results for ""DNA Footprinting""[mesh_terms]

Human Mitochondrial Transcription Factor B2 Is Required for Promoter Melting during Initiation of Transcription.

Unusually strong binding to the DNA minor groove by a highly twisted benzimidazole diphenylether: induced fit and bound water.

Discovery of Fur binding site clusters in Escherichia coli by information theory models.

Footprinting: a method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands.

Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.

Identification of regulatory elements by gene family footprinting and in vivo analysis.

Analysis of RNA polymerase-promoter complex formation.

Nucleosome organization on Kluyveromyces lactis centromeric DNAs.

The Escherichia coli RNA polymerase.anti-sigma 70 AsiA complex utilizes alpha-carboxyl-terminal domain upstream promoter contacts to transcribe from a -10/-35 promoter.

Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome.

Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.

Physical and structural basis for the strong interactions of the -ImPy- central pairing motif in the polyamide f-ImPyIm.

Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.

Using an L7Ae-Tethered, Hydroxyl Radical-Mediated Footprinting Strategy to Identify and Validate Kink-Turns in RNAs.

A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1.

Results for
""DNA Footprinting""[mesh_terms]