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Results for
""Position-Specific Scoring Matrices""[mesh_terms]

61 Results

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A convolutional network and attention mechanism-based approach to predict protein-RNA binding residues.

Ke Li, Hongwei Wu, Zhenyu Yue, Yu Sun, Chuan Xia

Computational biology and chemistry 2023;105():107901

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Identifying DNA-binding proteins based on multi-features and LASSO feature selection.

Shengli Zhang, Fu Zhu, Qianhao Yu, Xiaoyue Zhu

Biopolymers 2021;112(2):e23419

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Modeling Peptide-Protein Interactions by a Logo-Based Method: Application in Peptide-HLA Binding Predictions.

F Javier Moreno, Mariyana Atanasova, Ivan Dimitrov, Antonio Fernandez, Frits Koning, Irini Doytchinova

Molecules (Basel, Switzerland) 2024;29(2):

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TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features.

Liang Rao, Jun Hu, Yi-Heng Zhu, Gui-Jun Zhang, Dong-Jun Yu

Journal of chemical information and modeling 2021;61(1):505-515

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Robust and accurate prediction of self-interacting proteins from protein sequence information by exploiting weighted sparse representation based classifier.

Yang Li, Xue-Gang Hu, Zhu-Hong You, Li-Ping Li, Pei-Pei Li, Yan-Bin Wang, Yu-An Huang

BMC bioinformatics 2022;23(Suppl 7):518

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Stack-VTP: prediction of vesicle transport proteins based on stacked ensemble classifier and evolutionary information.

Yu Chen, Lixin Gao, Tianjiao Zhang

BMC bioinformatics 2023;24(1):137

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DeepDNAbP: A deep learning-based hybrid approach to improve the identification of deoxyribonucleic acid-binding proteins.

Md Faruk Hosen, S M Hasan Mahmud, Kawsar Ahmed, Wenyu Chen, Mohammad Ali Moni, Hong-Wen Deng, Watshara Shoombuatong, Md Mehedi Hasan

Computers in biology and medicine 2022;145():105433

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Set of approaches based on 3D structure and position specific-scoring matrix for predicting DNA-binding proteins.

Loris Nanni, Sheryl Brahnam

Bioinformatics (Oxford, England) 2020;35(11):1844-1851

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CompariPSSM: a PSSM-PSSM comparison tool for motif-binding determinant analysis.

Izabella Krystkowiak, Norman E Davey, Ifigenia Tsitsa

Bioinformatics (Oxford, England) 2024;40(11):

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Position-specific propensities of amino acids in the β-strand.

Parbati Biswas, Nicholus Bhattacharjee

BMC structural biology 2011;10():29

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Integrative approach for detecting membrane proteins.

Munira Alballa, Gregory Butler

BMC bioinformatics 2021;21(Suppl 19):575

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SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites.

Van-Minh Bui, Shun-Long Weng, Cheng-Tsung Lu, Tzu-Hao Chang, Julia Tzu-Ya Weng, Tzong-Yi Lee

BMC genomics 2016;17 Suppl 1(Suppl 1):9

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The prediction of palmitoylation site locations using a multiple feature extraction method.

Shao-Ping Shi, Xing-Yu Sun, Jian-Ding Qiu, Sheng-Bao Suo, Xiang Chen, Shu-Yun Huang, Ru-Ping Liang

Journal of molecular graphics & modelling 2013;40():125-30

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SXGBsite: Prediction of Protein-Ligand Binding Sites Using Sequence Information and Extreme Gradient Boosting.

Yonghong Xu, Ziqi Zhao, Yong Zhao

Genes 2020;10(12):965

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Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.

Hui Yan, Dong-Jun Yu, Xi-Bei Yang, Jing-Yu Yang, Hong-Bin Shen, Jun Hu

BMC bioinformatics 2014;15(1):297

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Results: 1 – 15 / 61

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Results for ""Position-Specific Scoring Matrices""[mesh_terms]

A convolutional network and attention mechanism-based approach to predict protein-RNA binding residues.

Identifying DNA-binding proteins based on multi-features and LASSO feature selection.

Modeling Peptide-Protein Interactions by a Logo-Based Method: Application in Peptide-HLA Binding Predictions.

TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features.

Robust and accurate prediction of self-interacting proteins from protein sequence information by exploiting weighted sparse representation based classifier.

Stack-VTP: prediction of vesicle transport proteins based on stacked ensemble classifier and evolutionary information.

DeepDNAbP: A deep learning-based hybrid approach to improve the identification of deoxyribonucleic acid-binding proteins.

Set of approaches based on 3D structure and position specific-scoring matrix for predicting DNA-binding proteins.

CompariPSSM: a PSSM-PSSM comparison tool for motif-binding determinant analysis.

Position-specific propensities of amino acids in the β-strand.

Integrative approach for detecting membrane proteins.

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites.

The prediction of palmitoylation site locations using a multiple feature extraction method.

SXGBsite: Prediction of Protein-Ligand Binding Sites Using Sequence Information and Extreme Gradient Boosting.

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.

Results for
""Position-Specific Scoring Matrices""[mesh_terms]