A Global Relationship Between Genome Size and Encoded Carbon Metabolic Strategies of Soil Bacteria.

Fenliang Fan, Jingjing Peng, Werner Liesack, Ziheng Peng, Shuo Jiao, Manuel Delgado-Baquerizo, Gehong Wei, Yahai Lu, Yu Luo, Xingjie Wu, Ashish Anil Malik

Journal: Ecology letters 2025;28(1):e70064

PMID: 39824780

Abstract

Microbial traits are critical for carbon sequestration and degradation in terrestrial ecosystems. Yet, our understanding of the relationship between carbon metabolic strategies and genomic traits like genome size remains limited. To address this knowledge gap, we conducted a global-scale meta-analysis of 2650 genomes, integrated whole-genome sequencing data, and performed a continental-scale metagenomic field study. We found that genome size was tightly associated with an increase in the ratio between genes encoding for polysaccharide decomposition and biomass synthesis that we defined as the carbon acquisition-to-biomass yield ratio (A/Y). We also show that horizontal gene transfer played a major evolutionary role in the expanded bacterial capacities in carbon acquisition. Our continental-scale field study further revealed a significantly negative relationship between the A/Y ratio and soil organic carbon stocks. Our work demonstrates a global relationship between genome size and the encoded carbon metabolic strategies of soil bacteria across terrestrial microbiomes.

© 2025 John Wiley & Sons Ltd.

Address: State Key Laboratory of Nutrient Use and Management, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing, China.; School of GeoSciences, University of Edinburgh, Edinburgh, UK.; State Key Laboratory of Crop Stress Biology in Arid Areas, Shanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Yangling, China.; Institute of Soil and Water Resources and Environmental Science, Zhejiang University, Hangzhou, China.; Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.; College of Urban and Environmental Sciences, Peking University, Beijing, China.; Laboratorio de Biodiversidad y Funcionamiento Ecosistemico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain.; Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.

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