Unlocking GPCR-ligand interactions: Measuring binding affinities with thermal shift assay.

Ivan Maslov, Aleksandra Luginina, Polina Khorn, Dmitrii Dashevskii, Valentin Borshchevskiy, Vadim Cherezov, Alexey Mishin, Marina Shevelyova, Daria Dmitrieva, Ivan Kapranov, Anatolii Belousov, Sergei Permyakov

Journal: Protein science : a publication of the Protein Society 2025;34(5):e70120

PMID: 40247825

Abstract

G protein-coupled receptors (GPCRs) constitute the largest transmembrane protein superfamily, with over 800 representatives in the human genome. Recognized as pivotal targets in pharmacological research and drug discovery, these receptors play a crucial role in advancing therapeutics. Understanding the molecular mechanisms of receptor-ligand interactions is imperative for drug discovery applications. However, experimental procedures for measuring ligand binding are complicated by various factors, including the transmembrane nature of the receptors and the high cost associated with specialized instruments and consumables. Here we introduce an application of the thermal shift assay (TSA) to measuring ligand binding affinities for GPCRs. TSA is a cost-effective and user-friendly method that detects changes in protein stability induced by alterations in environmental conditions. Employing the human A adenosine receptor as a representative GPCR, we determined binding constants for four orthosteric ligands and allosteric sodium using three mathematical models for TSA data approximation and analysis. Models were additionally validated by two antagonists of cysteinyl leukotriene GPCR (CysLTR), used as antiasthmatic drugs. Our results suggest that the TSA approach demonstrates a high degree of reproducibility and agreement with existing literature data, thereby affirming its suitability for investigating GPCR interactions with various types of ligands.

© 2025 The Protein Society.

Address: Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Moscow, Russia.; Pushchino Scientific Center for Biological Research of the Russian Academy of Science, Institute for Biological Instrumentation, Pushchino, Russia.; Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Moscow, Russia.; Sao Carlos Institute of Physics, University of Sao Paulo, Sao Carlos, São Paolo, Brazil.; Bridge Institute, Department of Chemistry, University of Southern California, Los Angeles, California, USA.; Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Moscow, Russia.; Frank Laboratory of Neutron Physics, Dubna, Russia.

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