Enhanced Regioselectivity Prediction of sp C-H Halogenation via Negative Data Augmentation and Multimodel Integration.

Lebin Su, Zhiting Zhang, Jia Qiu, Jiajun Zheng, Zhunzhun Yu, Qianghua Lin, Chonghuan Zhang, Kuangbiao Liao

Journal: Journal of chemical information and modeling 2025;65(7):3420-3430

PMID: 40111160

Abstract

Efficient molecular editing is pivotal in synthetic chemistry, especially for developing drugs, materials, and high-value chemicals. Electrophilic aromatic substitution (SAr) reactions, specifically sp C-H halogenation, face significant challenges due to electronic and steric factors, necessitating extensive trial-and-error. This study introduces an innovative machine learning-based model to predict halogenation sites in SAr reactions, achieving an average accuracy of 93% in 5-fold cross-validation. Employing ensemble techniques, particularly AutoGluon-Tabular (AG), the model demonstrates broad applicability across various aromatic halides, enhancing its utility in drug design, materials science, and more. By reducing experimental uncertainty and optimizing synthetic pathways, this model saves considerable time and resources, thereby accelerating innovation in synthetic chemistry.

Address: Guangzhou Municipal and Guangdong Provincial Key Laboratory of Molecular Target & Clinical Pharmacology, the NMPA and State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences, Guangzhou Laboratory, Guangzhou Medical University, Guangzhou 511436, China.; Guangzhou National Laboratory, Guangzhou 510005, China.; Southern University of Science and Technology, Shenzhen 518055, China.; Guangzhou National Laboratory, Guangzhou 510005, China.; AIChemEco Inc., Guangzhou 510530, China.; Guangzhou Municipal and Guangdong Provincial Key Laboratory of Molecular Target & Clinical Pharmacology, the NMPA and State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences, Guangzhou Laboratory, Guangzhou Medical University, Guangzhou 511436, China.; Guangzhou National Laboratory, Guangzhou 510005, China.

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