Metabolome guided treasure hunt - learning from metabolic diversity.

Mustafa Bulut, Esra Karakas, Alisdair Fernie

Journal: Journal of plant physiology 2025;309():154494

PMID: 40288107

Abstract

Metabolomics is a rapidly evolving field focused on the comprehensive identification and quantification of small molecules in biological systems. As the final layer of the biological hierarchy following of the genome, transcriptome and proteome, it presents a dynamic snapshot of phenotype, influenced by genetic, environmental and physiological factors. Whilst the metabolome sits downstream of genes and proteins, there are multiple higher levels-tissues, organs, the entire organism, and interactions with other organisms, which need to be considered in order to fully comprehend organismal biology. Advances in metabolomics continue to expand its applications in plant biology, biotechnology, and natural product discovery unlocking many of nature's most beneficial colors, tastes, nutrients and medicines. Flavonoids and other specialized metabolites are essential for plant defense against oxidative stress and function as key phytonutrients for human health. Recent advancements in gene-editing and metabolic engineering have significantly improved the nutritional value and flavor of crop plants. Here we highlight how advanced metabolic analysis is driving improvements in crops uncovering genes that influence nutrient and flavor profile and plant derived compounds with medicinal potential.

Copyright © 2025 The Authors. Published by Elsevier GmbH.. All rights reserved.

Address: Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, Golm, 14476, Potsdam, Germany.; Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, Golm, 14476, Potsdam, Germany. Electronic address: [email protected].
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