Longitudinal big biological data in the AI era.

Adil Mardinoglu, Mathias Uhlen, Leroy Hood, Hasan Turkez, Minho Shong, Jens Nielsen, Bernhard O Palsson, Vishnuvardhan Pogunulu Srinivasulu

Journal: Molecular systems biology 2025;21(9):1147-1165

PMID: 40764831

Abstract

Generating longitudinal and multi-layered big biological data is crucial for effectively implementing artificial intelligence (AI) and systems biology approaches in characterising whole-body biological functions in health and complex disease states. Big biological data consists of multi-omics, clinical, wearable device, and imaging data, and information on diet, drugs, toxins, and other environmental factors. Given the significant advancements in omics technologies, human metabologenomics, and computational capabilities, several multi-omics studies are underway. Here, we first review the recent application of AI and systems biology in integrating and interpreting multi-omics data, highlighting their contributions to the creation of digital twins and the discovery of novel biomarkers and drug targets. Next, we review the multi-omics datasets generated worldwide to reveal interactions across multiple biological layers of information over time, which enhance precision health and medicine. Finally, we address the need to incorporate big biological data into clinical practice, supporting the development of a clinical decision support system essential for AI-driven hospitals and creating the foundation for an AI and systems biology-based healthcare model.

© 2025. The Author(s).

Address: Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden. [email protected].; Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King's College London, London, United Kingdom. [email protected].; Department of Medical Biology, Faculty of Medicine, Atatürk University, Erzurum, 25240, Turkey.; Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea.; Vizzhy Longevity Inc., Middletown, DE, 19709, USA.; BioInnovation Institute, Copenhagen, DK-2200, Denmark.; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens, Lyngby, Denmark.; Phenome Health, Seattle, WA, USA.; Institute for Systems Biology, Seattle, WA, 98109, USA.; Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.

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