Effect of Vitamin D Supplementation on Human Gut Microbiota: A Systematic Review of Randomized Controlled Trials.

Falak Zeb, Tareq Osaili, Reyad Shakir Obaid, Farah Naja, Hadia Radwan, Hayder Hasan, Mona Hashim, Iftikhar Alam, Dimitrios Papandreou, Leila Cheikh Ismail, Nadia Alkalbani, Ioannis Savvaidis, Sharifa AlBlooshi

Journal: Nutrition reviews 2025

PMID: 40673989

Abstract

CONTEXT

Studies findings have suggested that vitamin D plays a critical role in maintaining overall health, including having a potential impact on gut microbiota composition, which influences various physiological processes.

OBJECTIVES

To examine the effects of vitamin D supplementation on human gut microbiota composition and diversity by analyzing findings from randomized controlled trials (RCTs).

DATA SOURCES

A comprehensive search of the MEDLINE, Web of Science, Scopus, and the Cochrane Library electronic databases was conducted to identify relevant studies published from January 1, 2015, to November 30, 2024. The Preferred Reporting Items for Systematic Reviews and Meta-Analysis statement was followed.

DATA EXTRACTION

Inclusion criteria were RCTs investigating the impact of vitamin D supplementation on gut microbiota, with outcomes measured using high-throughput sequencing techniques. This review included 14 RCTs encompassing a total of 1458 participants of varying health status and supplementation regimens.

DATA ANALYSIS

Findings demonstrated that vitamin D supplementation modulates gut microbiota composition, with significant increases observed in bacterial taxa associated with anti-inflammatory and gut health-promoting properties, such as Bifidobacterium and Lactobacillus, as well as an increase in the Bacteroidetes to Firmicutes ratio. Some trials reported enhanced microbial diversity (α and β diversity), and others highlighted variability based on dosage, duration, and baseline vitamin D status. Additionally, specific alterations in microbial biomarkers such as calprotectin and trimethylamine N-oxide, which is linked to vitamin D metabolism, were noted.

CONCLUSIONS

Although promising, the findings underscore the heterogeneity in study designs and methodologies, emphasizing the need for standardized approaches to assess causality and clinical relevance. This review provides valuable insights into the interplay between vitamin D and gut microbiota, offering a foundation for personalized nutritional strategies targeting microbiome modulation. Future research should explore the long-term effects of vitamin D supplementation on gut microbiota and its implications for health outcomes in diverse populations.

SYSTEMATIC REVIEW REGISTRATION

PROSPERO registration no. CRD42024628080.

© The Author(s) 2025. Published by Oxford University Press on behalf of the International Life Sciences Institute. All rights reserved. For commercial re-use, please contact [email protected] for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact [email protected].

Address: Research Institute of Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Research Institute of Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Clinical Nutrition and Dietetics, College of Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Nutrition and Food Technology, Faculty of Agriculture, Jordan University of Science and Technology, Irbid, Jordan.; Research Institute of Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Clinical Nutrition and Dietetics, College of Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Research Institute of Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Clinical Nutrition and Dietetics, College of Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Women's and Reproductive Health, University of Oxford, Nuffield, Oxford, United Kingdom.; Research Institute of Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Clinical Nutrition and Dietetics, College of Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Faculty of Agriculture and Food Sciences, Department of Nutrition and Food Sciences, American University of Beirut, Beirut, Lebanon.; Research Institute of Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; Department of Environmental Health Sciences, College of Health Sciences, University of Sharjah, Sharjah, United Arab Emirates.; College of Natural and Health Sciences, Zayed University, Dubai, United Arab Emirates.; Department of Human Nutrition and Dietetics, Bacha Khan University, Charsadda, Pakistan.
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