Experimental-theoretical study of laccase as a detoxifier of aflatoxins.

Marco Zaccaria, William Dawson, Darius Russel Kish, Massimo Reverberi, Maria Carmela Bonaccorsi di Patti, Marek Domin, Viviana Cristiglio, Bun Chan, Luca Dellafiora, Frank Gabel, Takahito Nakajima, Luigi Genovese, Babak Momeni

Journal: Scientific reports 2023;13(1):860

PMID: 36650163

Abstract

We investigate laccase-mediated detoxification of aflatoxins, fungal carcinogenic food contaminants. Our experimental comparison between two aflatoxins with similar structures (AFB and AFG) shows significant differences in laccase-mediated detoxification. A multi-scale modeling approach (Docking, Molecular Dynamics, and Density Functional Theory) identifies the highly substrate-specific changes required to improve laccase detoxifying performance. We employ a large-scale density functional theory-based approach, involving more than 7000 atoms, to identify the amino acid residues that determine the affinity of laccase for aflatoxins. From this study we conclude: (1) AFB is more challenging to degrade, to the point of complete degradation stalling; (2) AFG is easier to degrade by laccase due to its lack of side products and favorable binding dynamics; and (3) ample opportunities to optimize laccase for aflatoxin degradation exist, especially via mutations leading to π-π stacking. This study identifies a way to optimize laccase for aflatoxin bioremediation and, more generally, contributes to the research efforts aimed at rational enzyme optimization.

© 2023. The Author(s).

Address: Department of Biology, Boston College, Chestnut Hill, MA, 02467, USA.; RIKEN Center for Computational Science, Kobe, 6500047, Japan.; Department of Environmental and Evolutionary Biology, "Sapienza" University of Rome, 00185, Rome, Italy.; Department of Biochemical Sciences "Alessandro Rossi Fanelli", "Sapienza" University of Rome, 00185, Rome, Italy.; Department of Chemistry, Boston College, Chestnut Hill, MA, 02467, USA.; Institut Laue-Langevin, 38042, Grenoble, France.; Graduate School of Engineering, Nagasaki University, Nagasaki, 8528521, Japan.; Department of Food and Drug, University of Parma, 43124, Parma, Italy.; CEA/CNRS/IBS, University Grenoble Alpes, 38044, Grenoble, France.; CEA/INAC-MEM/L-Sim, University Grenoble Alpes, 38044, Grenoble, France.; Department of Biology, Boston College, Chestnut Hill, MA, 02467, USA. [email protected].
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