A methodology for creating mutants of G-protein coupled receptors stabilized in active state by combining statistical thermodynamics and evolutionary molecular engineering.

Taisei Yamamoto, Satoshi Yasuda, Rinshi S Kasai, Ryosuke Nakano, Simon Hikiri, Kanna Sugaya, Tomohiko Hayashi, Satoshi Ogasawara, Mitsunori Shiroishi, Takahiro K Fujiwara, Masahiro Kinoshita, Takeshi Murata

Journal: Protein science : a publication of the Protein Society 2022;31(10):e4425

PMID: 36173170

Abstract

We challenged the stabilization of a G-protein coupled receptor (GPCR) in the active state solely by multiple amino-acid mutations without the agonist binding. For many GPCRs, the free energy of the active state is higher than that of the inactive state. When the inactive state is stabilized through the lowering of its free energy, the apparent midpoint temperature of thermal denaturation T exhibits a significant increase. However, this is not always the case for the stabilization of the active state. We constructed a modified version of our methodology combining statistical thermodynamics and evolutionary molecular engineering, which was recently developed for the inactive state. First, several residues to be mutated are determined using our statistical-thermodynamics theory. Second, a gene (mutant) library is constructed using Escherichia coli cells to efficiently explore most of the mutational space. Third, for the mutant screening, the mutants prepared in accordance with the library are expressed in engineered Saccharomyces cerevisiae YB14 cells which can grow only when a GPCR mutant stabilized in the active state has signaling function. For the adenosine A receptor tested, the methodology enabled us to sort out two triple mutants and a double mutant. It was experimentally corroborated that all the mutants exhibit much higher binding affinity for G protein than the wild type. Analyses indicated that the mutations make the structural characteristics shift toward those of the active state. However, only slight increases in T resulted from the mutations, suggesting the unsuitability of T to the stability measure for the active state.

© 2022 The Protein Society.

Address: Department of Chemistry, Graduate School of Science, Chiba University, Chiba, Japan.; Membrane Protein Research Center, Chiba University, Chiba, Japan.; Molecular Chirality Research Center, Chiba University, Chiba, Japan.; Institute for Glyco-core Research (iGCORE), Gifu University, Gifu, Japan.; Institute for Life and Medical Sciences, Kyoto University, Kyoto, Japan.; Graduate School of Engineering Science, Osaka University, Osaka, Japan.; Interdisciplinary Program of Biomedical Engineering, Assistive Technology, and Art and Sports Sciences, Faculty of Engineering, Niigata University, Niigata, Japan.; Institute of Advanced Energy, Kyoto University, Kyoto, Japan.; Institute for Advanced Academic Research, Chiba University, Chiba, Japan.; Department of Biological Science and Technology, Tokyo University of Science, Tokyo, Japan.; Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Kyoto, Japan.; Center for the Promotion of Interdisciplinary Education and Research, Kyoto University, Kyoto-shi, Japan.
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