Evidence that the catalytic mechanism of heme a synthase involves the formation of a carbocation stabilized by a conserved glutamate.

Elise D Rivett, Hannah G Addis, Jonathan V Dietz, Jayda A Carroll-Deaton, Shipra Gupta, Koji L Foreman, Minh Anh Dang, Jennifer L Fox, Oleh Khalimonchuk, Eric L Hegg

Journal: Archives of biochemistry and biophysics 2023;744():109665

PMID: 37348627

Abstract

In eukaryotes and many aerobic prokaryotes, the final step of aerobic respiration is catalyzed by an aa-type cytochrome c oxidase, which requires a modified heme cofactor, heme a. The conversion of heme b, the prototypical cellular heme, to heme o and ultimately to heme a requires two modifications, the latter of which is conversion of a methyl group to an aldehyde, catalyzed by heme a synthase (HAS). The N- and C-terminal halves of HAS share homology, and each half contains a heme-binding site. Previous reports indicate that the C-terminal site is occupied by a heme b cofactor. The N-terminal site may function as the substrate (heme o) binding site, although this has not been confirmed experimentally. Here, we assess the role of conserved residues from the N- and C-terminal heme-binding sites in HAS from prokaryotic (Shewanella oneidensis) and eukaryotic (Saccharomyces cerevisiae) species - SoHAS/CtaA and ScHAS/Cox15, respectively. A glutamate within the N-terminal site is found to be critical for activity in both types of HAS, consistent with the hypothesis that a carbocation forms transiently during catalysis. In contrast, the residue occupying the analogous C-terminal position is dispensable for enzyme activity. In SoHAS, the C-terminal heme ligands are critical for stability, while in ScHAS, substitutions in either heme-binding site have little effect on global structure. In both species, in vivo accumulation of heme o requires the presence of an inactive HAS variant, highlighting a potential regulatory role for HAS in heme o biosynthesis.

Copyright © 2023 Elsevier Inc. All rights reserved.

Address: Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.; Department of Chemistry and Biochemistry, College of Charleston, Charleston, SC, 29424, USA.; Department of Biochemistry, University of Nebraska, Lincoln, NE, 68588, USA.; Department of Chemistry and Biochemistry, College of Charleston, Charleston, SC, 29424, USA. Electronic address: [email protected].; Department of Biochemistry, University of Nebraska, Lincoln, NE, 68588, USA; Nebraska Redox Biology Center, University of Nebraska, Lincoln, NE, 68588, USA; Fred & Pamela Buffett Cancer Center, Omaha, NE, 68198, USA. Electronic address: [email protected].; Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA. Electronic address: [email protected].
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