A comparative genome analysis of the () class .

Young C Song, Sophie I Holland, Matthew Lee, Gao Chen, Frank E Löffler, Michael J Manefield, Philip Hugenholtz, Ulrike Kappler

Journal: Microbial genomics 2023;9(6):mgen001039

PMID: 37294008

Abstract

is recognized for its ability to anaerobically ferment dichloromethane (DCM), and a catabolic model has recently been proposed. is currently the only axenic representative of its class, the , according to the Genome Taxonomy Database. However, substantial additional diversity has been revealed in this lineage through culture-independent exploration of anoxic habitats. Here we performed a comparative analysis of 10 members of the representing three orders, and infer that anaerobic DCM degradation appears to be a recently acquired trait only present in some members of the order . Inferred traits common to the class include the use of amino acids as carbon and energy sources for growth, energy generation via a remarkable range of putative electron-bifurcating protein complexes and the presence of S-layers. The ability of to grow on serine without DCM was experimentally confirmed and a high abundance of the electron-bifurcating protein complexes and S-layer proteins was noted when this organism was grown on DCM. We suggest that members of the are low-abundance fermentative scavengers in anoxic habitats.

Address: The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, Queensland, 4072, Australia.; School of Civil and Environmental Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia.; Present address: School of Engineering & Physical Sciences, Heriot-Watt University, Edinburgh, UK.; Center for Environmental Biotechnology, Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA.; Department of Microbiology, Department of Bioengineering and Soil Science, University of Tennessee, Knoxville, Tennessee, USA.; Oak Ridge National Laboratory, Biosciences Division, Oak Ridge, Tennessee, USA.; The University of Queensland, School of Chemistry and Molecular Biosciences, St Lucia, Queensland, 4072, Australia.
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