Missing heritability of Wilson disease: a search for the uncharacterized mutations.

Shubhrajit Roy, Sampurna Ghosh, Jharna Ray, Kunal Ray, Mainak Sengupta

Journal: Mammalian genome : official journal of the International Mammalian Genome Society 2023;34(1):1-11

PMID: 36462057

Abstract

Wilson disease (WD), a copper metabolism disorder caused by mutations in ATP7B, manifests heterogeneous clinical features. Interestingly, in a fraction of clinically diagnosed WD patients, mutations in ATP7B appears to be missing. In this review we discuss the plausible explanations of this missing heritability and propose a workflow that can identify the hidden mutations. Mutation analyses of WD generally includes targeted sequencing of ATP7B exons, exon-intron boundaries, and rarely, the proximal promoter region. We propose that variants in the distal cis-regulatory elements and/or deep intronic variants that impact splicing might well represent the hidden mutations. Heterozygous del/ins that remain refractory to conventional PCR-sequencing method may also represent such mutations. In this review, we also hypothesize that mutations in the key copper metabolism genes, like, ATOX1, COMMD1, and SLC31A1, could possibly lead to a WD-like phenotype. In fact, WD does present overlapping symptoms with other rare genetic disorders; hence, the possibility of a misdiagnosis and thus adding to missing heritability cannot be excluded. In this regard, it seems that whole-genome analysis will provide a comprehensive and rapid molecular diagnosis of WD. However, considering the associated cost for such a strategy, we propose an alternative customized screening schema of WD which include targeted sequencing of ATP7B locus as well as other key copper metabolism genes. Success of such a schema has been tested in a pilot study.

© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Address: S. N. Pradhan Centre for Neurosciences, University of Calcutta, Kolkata, India.; Post-doctoral Fellow, Physiology Department, Johns Hopkins University, Baltimore, USA.; Department of Genetics, University of Calcutta, 35 Ballygunge Circular Road, Kolkata, 700019, India.; Department of Biochemistry, Microbiology and Immunology, University of Saskatchewan, Saskatoon, Canada.; S. N. Pradhan Centre for Neurosciences, University of Calcutta, Kolkata, India.; Ramakrishna Mission Vivekananda Educational and Research Institute, Narendrapur, Kolkata, 700 103, India. [email protected].; Department of Genetics, University of Calcutta, 35 Ballygunge Circular Road, Kolkata, 700019, India. [email protected].
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