DiPODS: A Reagent for Site-Specific Bioconjugation via the Irreversible Rebridging of Disulfide Linkages.

Elaheh Khozeimeh Sarbisheh, Guillaume Dewaele-Le Roi, Whitney E Shannon, Sally Tan, Yujia Xu, Brian M Zeglis, Eric W Price

Journal: Bioconjugate chemistry 2021;31(12):2789-2806

PMID: 33210532

Abstract

Chemoselective reactions with thiols have long held promise for the site-specific bioconjugation of antibodies and antibody fragments. Yet bifunctional probes bearing monovalent maleimides-long the "gold standard" for thiol-based ligations-are hampered by two intrinsic issues: the instability of the maleimide-thiol bond and the need to permanently disrupt disulfide linkages in order to facilitate bioconjugation. Herein, we present the synthesis, characterization, and validation of DiPODS, a novel bioconjugation reagent containing a pair of oxadiazolyl methyl sulfone moieties capable of irreversibly forming covalent bonds with two thiolate groups while simultaneously rebridging disulfide linkages. The reagent was synthesized from commercially available starting materials in 8 steps, during which rotamers were encountered and investigated both experimentally and computationally. DiPODS is designed to be modular and can thus be conjugated to any payload through a pendant terminal primary amine (DiPODS-PEG-NH). Subsequently, the modification of a HER2-targeting Fab with a fluorescein-conjugated variant of DiPODS (DiPODS-PEG-FITC) reinforced the site-specificity of the reagent, illustrated its ability to rebridge disulfide linkages, and produced an immunoconjugate with properties superior to those of an analogous construct created using traditional stochastic bioconjugation techniques. Ultimately, we believe that this work has particularly important implications for the synthesis of immunoconjugates, specifically for ensuring that the attachment of cargoes to immunoglobulins is robust, irreversible, and biologically and structurally benign.

Address: Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N-5C9, Canada.; Department of Chemistry, Hunter College, City University of New York, New York, New York 10021, United States.; Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, New York, New York 10021, United States.; Department of Radiology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, United States.
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