On the roles of calcium and zinc ions in the formation of a catalytically active form of the metalloenzyme, l-alanyl-d-glutamate peptidase of the bacteriophage T5 (EndoT5).

Victor P Kutyshenko, Galina V Mikoulinskaia, Dmitry A Prokhorov, Nikolai V Molochkov, Alexander Y Yegorov, Vladimir N Uversky

Journal: International journal of biological macromolecules 2021;164():2711-2716

PMID: 32841672

Abstract

Structural consequences of the binding of metal ions (regulatory Ca and catalytic Zn) to the metalloenzyme l-alanyl-d-glutamate peptidase of the bacteriophage T5 (Endo T5) and some of its analogues containing single amino acid substitutions in the active center were analyzed by nuclear magnetic resonance (NMR), circular dichroism (CD) and calorimetry. Analyses revealed that the native EndoT5 undergoes strong structural rearrangements as a result of Zn binding. This structural rearrangement resulting in the formation of an active enzyme is completed by the Ca binding. In this case, the NMR spectra uncover the tautomerism of the NH protons of histidine imidazoles responsible for the Zn coordination. For the EndoT5 analogues with point substitutions in the Ca-binding site, similar conformational rearrangements are observed upon Zn binding. However, no characteristic changes in the NMR spectra associated with the Ca binding were detected. The roles of the proton exchange in the process of Ca-induced activation of the enzymatic activity of EndoT5 is discussed.

Copyright © 2020. Published by Elsevier B.V.

Address: Institute of Theoretical and Experimental Biophysics, RAS, Pushchino, Moscow Region 142290, Russia. Electronic address: [email protected].; Branch of Shemyakin & Ovchinnikov's Institute of Bioorganic Chemistry, RAS, Pushchino, Moscow Region 142290, Russia. Electronic address: [email protected].; Institute of Theoretical and Experimental Biophysics, RAS, Pushchino, Moscow Region 142290, Russia.; Institute of Theoretical and Experimental Biophysics, RAS, Pushchino, Moscow Region 142290, Russia. Electronic address: [email protected].; Department of Molecular Medicine and USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, USA; Laboratory of New Methods in Biology, Institute for Biological Instrumentation of the Russian Academy of Sciences, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Pushchino, Moscow Region 142290, Russia. Electronic address: [email protected].

Link outs

Free resources

Subscription / membership required

Bant logo

© Copyright 2026, Nutrition Evidence

NED wishes to thank the following organisations for their support:

We use cookies to improve your experience and analyze site traffic with Google Analytics. By continuing to use our site, you agree to our use of cookies. Learn more.