Glycomyces buryatensis sp. nov., an actinobacterium isolated from steppe soil.

Elena Nikitina, Shao-Wei Liu, Fei-Na Li, Lyubov Buyantueva, Elena Abidueva, Cheng-Hang Sun

Journal: International journal of systematic and evolutionary microbiology 2020;70(2):1356-1363

PMID: 31808739

Abstract

A novel actinobacterial strain, designated 18T, was isolated from a steppe soil sample collected in Buryatia, Russia and subjected to polyphasic taxonomic characterization. The strain was aerobic and Gram-stain-positive. The 16S rRNA gene sequence of strain 18T exhibited highest similarity to Glycomyces paridis CPCC 204357T (97.2 %). Results of phylogenetic analysis showed that strain 18T formed a distinct branch clearly affiliated to the genus Glycomyces. Whole-cell hydrolysates of the isolate contained meso-diaminopimelic acid as the cell-wall diamino acid. The whole-cell sugar profile was found to contain galactose, glucose, ribose and xylose. MK-10(H4) and MK-11(H4) were the predominant menaquinones. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, five unidentified phospholipids and four unidentified polar lipids. The major fatty acids identified were anteiso-C15 : 0 and iso-C15 : 0. The G+C content of the genomic DNA of strain 18T was 68.0 mol% (draft genome sequence). Based on its phylogenetic, phenotypic and chemotaxonomic features, strain 18T was considered to represent a novel species of the genus Glycomyces, for which the name Glycomyces buryatensis sp. nov. is proposed. The type strain of Glycomyces buryatensis is 18T (=JCM 33362T=CGMCC 4.7610T).

Address: Baikal Institute of Nature Management, Siberian Branch, Russian Academy of Sciences, Ulan-Ude, 670047, Russia.; Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, PR China.; Banzarov Buryat State University, Ulan-Ude, 670000, Russia.; Institute of General and Experimental Biology, Siberian Branch, Russian Academy of Sciences, Ulan-Ude, 670047, Russia.

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