Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers.

Hanne Antila, Pavel Buslaev, Fernando Favela-Rosales, Tiago M Ferreira, Ivan Gushchin, Matti Javanainen, Batuhan Kav, Jesper J Madsen, Josef Melcr, Markus S Miettinen, Jukka Määttä, Ricky Nencini, O H Samuli Ollila, Thomas J Piggot

Journal: The journal of physical chemistry. B 2020;123(43):9066-9079

PMID: 31574222

Abstract

Phosphatidylserine (PS) is a negatively charged lipid type commonly found in eukaryotic membranes, where it interacts with proteins via nonspecific electrostatic interactions as well as via specific binding. Moreover, in the presence of calcium ions, PS lipids can induce membrane fusion and phase separation. Molecular details of these phenomena remain poorly understood, partly because accurate models to interpret the experimental data have not been available. Here we gather a set of previously published experimental NMR data of C-H bond order parameter magnitudes, ||, for pure PS and mixed PS:PC (phosphatidylcholine) lipid bilayers and augment this data set by measuring the signs of in the PS headgroup using S-DROSS solid-state NMR spectroscopy. The augmented data set is then used to assess the accuracy of the PS headgroup structures in, and the cation binding to, PS-containing membranes in the most commonly used classical molecular dynamics (MD) force fields including CHARMM36, Lipid17, MacRog, Slipids, GROMOS-CKP, Berger, and variants. We show large discrepancies between different force fields and that none of them reproduces the NMR data within experimental accuracy. However, the best MD models can detect the most essential differences between PC and PS headgroup structures. The cation binding affinity is not captured correctly by any of the PS force fields-an observation that is in line with our previous results for PC lipids. Moreover, the simulated response of the PS headgroup to bound ions can differ from experiments even . The collected experimental data set and simulation results will pave the way for development of lipid force fields that correctly describe the biologically relevant negatively charged membranes and their interactions with ions. This work is part of the NMRlipids open collaboration project ( nmrlipids.blogspot.fi ).

Address: Department of Theory and Bio-Systems , Max Planck Institute of Colloids and Interfaces , 14424 Potsdam , Germany.; Research Center for Molecular Mechanisms of Aging and Age-Related Diseases , Moscow Institute of Physics and Technology , Dolgoprudny , 141701 Russia.; Departamento de Investigación , Tecnológico Nacional de México , Campus Zacatecas Occidente, C. P. 99102 Zacatecas , México.; NMR Group - Institute for Physics , Martin-Luther University Halle-Wittenberg , 06120 Halle (Saale) , Germany.; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences , Flemingovo nám. 542/2 , CZ-16610 Prague 6 , Czech Republic.; Department of Chemistry , The University of Chicago , 60637 Chicago , Illinois , United States of America.; Department of Global Health, College of Public Health , University of South Florida , 33612 Tampa , Florida , United States of America.; Groningen Biomolecular Sciences and Biotechnology Institute and The Zernike Institute for Advanced Materials , University of Groningen , 9747 AG Groningen , The Netherlands.; Department of Chemistry and Materials Science , Aalto University , 00076 Espoo , Finland.; Institute of Biotechnology , University of Helsinki , 00014 Helsinki , Finland.; Chemistry , University of Southampton , Highfield , Southampton SO17 1BJ , United Kingdom.

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