X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.

Yulia Ilina, Christian Lorent, Sagie Katz, Jae-Hun Jeoung, Seigo Shima, Marius Horch, Ingo Zebger, Holger Dobbek

Journal: Angewandte Chemie (International ed. in English) 2020;58(51):18710-18714

PMID: 31591784

Abstract

[NiFe] hydrogenases are complex model enzymes for the reversible cleavage of dihydrogen (H ). However, structural determinants of efficient H binding to their [NiFe] active site are not properly understood. Here, we present crystallographic and vibrational-spectroscopic insights into the unexplored structure of the H -binding [NiFe] intermediate. Using an F -reducing [NiFe]-hydrogenase from Methanosarcina barkeri as a model enzyme, we show that the protein backbone provides a strained chelating scaffold that tunes the [NiFe] active site for efficient H binding and conversion. The protein matrix also directs H diffusion to the [NiFe] site via two gas channels and allows the distribution of electrons between functional protomers through a subunit-bridging FeS cluster. Our findings emphasize the relevance of an atypical Ni coordination, thereby providing a blueprint for the design of bio-inspired H -conversion catalysts.

© 2019 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

Address: Institut für Biologie, Strukturbiologie/Biochemie, Humboldt-Universität zu Berlin, Philippstraße 13, 10115, Berlin, Germany.; Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany.; Max-Planck-Institut für Terrestrische Mikrobiologie, Karl-von-Frisch-Str. 10, 35043, Marburg, Germany.; Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany.; Department of Chemistry and York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK.
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