Computer aided protein engineering to enhance the thermo-stability of CXCR1- T4 lysozyme complex.

Yang Wang, Jae-Hyun Park, Cecylia Severin Lupala, Ji-Hye Yun, Zeyu Jin, Lanqing Huang, Xuanxuan Li, Leihan Tang, Weontae Lee, Haiguang Liu

Journal: Scientific reports 2020;9(1):5317

PMID: 30926935

Abstract

CXCR1, a member in G-protein coupled receptor (GPCR) family, binds to chemokine interleukin-8 (IL-8) specifically and transduces signals to mediate immune and inflammatory responses. Despite the importance of CXCR1, high-resolution structure determination is hindered by the challenges in crystallization. It has been shown that properly designed mutants with enhanced thermostability, together with fusion partner proteins, can be useful to form crystals for GPCR proteins. In this study, in silico protein design was carried out by using homology modeling and molecular dynamics simulations. To validate the computational modeling results, the thermostability of several mutants and the wild type were measured experimentally. Both computational results and experimental data suggest that the mutant L126W has a significant improvement in the thermostability. This study demonstrated that in silico design can guide protein engineering and potentially facilitate protein crystallography research.

Address: Complex Systems Division, Beijing Computational Science Research Center, Beijing, 100193, China.; Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul, 03722, South Korea.; Department of Engineering Physics, Tsinghua University, Beijing, 100084, China.; Department of Physics and Institute of Computational and Theoretical Studies, Hong Kong Baptist University, Hong Kong, China.; Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul, 03722, South Korea. [email protected].; Complex Systems Division, Beijing Computational Science Research Center, Beijing, 100193, China. [email protected].
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