Molecular model of human tropoelastin and implications of associated mutations.

Anna Tarakanova, Giselle C Yeo, Clair Baldock, Anthony S Weiss, Markus J Buehler

Journal: Proceedings of the National Academy of Sciences of the United States of America 2018;115(28):7338-7343

PMID: 29946030

Abstract

Protein folding poses unique challenges for large, disordered proteins due to the low resolution of structural data accessible in experiment and on the basis of short time scales and limited sampling attainable in computation. Such molecules are uniquely suited to accelerated-sampling molecular dynamics algorithms due to a flat-energy landscape. We apply these methods to report here the folded structure in water from a fully extended chain of tropoelastin, a 698-amino acid molecular precursor to elastic fibers that confer elasticity and recoil to tissues, finding good agreement with experimental data. We then study a series of artificial and disease-related mutations, yielding molecular mechanisms to explain structural differences and variation in hierarchical assembly observed in experiment. The present model builds a framework for studying assembly and disease and yields critical insight into molecular mechanisms behind these processes. These results suggest that proteins with disordered regions are suitable candidates for characterization by this approach.

Address: Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 01239.; School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; Charles Perkins Centre, The University of Sydney, Sydney, NSW 2006, Australia.; Wellcome Trust Centre for Cell-Matrix Research, Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Manchester Academic Health Science Centre, The University of Manchester, Manchester M13 9PT, United Kingdom.; Bosch Institute, The University of Sydney, Sydney, NSW 2006, Australia.; Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 01239; [email protected].
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