An ornithine ω-aminotransferase required for growth in the absence of exogenous proline in the archaeon .

Ren-Chao Zheng, Shin-Ichi Hachisuka, Hiroya Tomita, Tadayuki Imanaka, Yu-Guo Zheng, Makoto Nishiyama, Haruyuki Atomi

Journal: The Journal of biological chemistry 2019;293(10):3625-3636

PMID: 29352105

Abstract

Aminotransferases are pyridoxal 5'-phosphate-dependent enzymes that catalyze reversible transamination reactions between amino acids and α-keto acids, and are important for the cellular metabolism of nitrogen. Many bacterial and eukaryotic ω-aminotransferases that use l-ornithine (Orn), l-lysine (Lys), or γ-aminobutyrate (GABA) have been identified and characterized, but the corresponding enzymes from archaea are unknown. Here, we examined the activity and function of TK2101, a gene annotated as a GABA aminotransferase, from the hyperthermophilic archaeon We overexpressed the TK2101 gene in and purified and characterized the recombinant protein and found that it displays only low levels of GABA aminotransferase activity. Instead, we observed a relatively high ω-aminotransferase activity with l-Orn and l-Lys as amino donors. The most preferred amino acceptor was 2-oxoglutarate. To examine the physiological role of TK2101, we created a TK2101 gene-disruption strain (ΔTK2101), which was auxotrophic for proline. Growth comparison with the parent strain KU216 and the biochemical characteristics of the protein strongly suggested that TK2101 encodes an Orn aminotransferase involved in the biosynthesis of l-Pro. Phylogenetic comparisons of the TK2101 sequence with related sequences retrieved from the databases revealed the presence of several distinct protein groups, some of which having no experimentally studied member. We conclude that TK2101 is part of a novel group of Orn aminotransferases that are widely distributed at least in the genus , but perhaps also throughout the Archaea.

© 2018 by The American Society for Biochemistry and Molecular Biology, Inc.

Address: From the Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan.; the College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310032, China.; CREST, Japan Science and Technology Agency, 7, Gobancho, Chiyoda-ku, Tokyo 102-0076, Japan.; the Department of Biotechnology, College of Life Science, Ritsumeikan University Noji-Higashi, Kusatsu 525-8577, Japan.; the Biotechnology Research Center, University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku Tokyo 113-8657, Japan, and.; From the Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan, [email protected].
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