Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb).

Thomas T Baldwin, Evelina Basenko, Omar Harb, Neil A Brown, Martin Urban, Kim E Hammond-Kosack, Phil P Bregitzer

Journal: Fungal genetics and biology : FG & B 2019;115():90-93

PMID: 29355605

Abstract

There is no comprehensive storage for generated mutants of Fusarium graminearum or data associated with these mutants. Instead, researchers relied on several independent and non-integrated databases. FgMutantDb was designed as a simple spreadsheet that is accessible globally on the web that will function as a centralized source of information on F. graminearum mutants. FgMutantDb aids in the maintenance and sharing of mutants within a research community. It will serve also as a platform for disseminating prepublication results as well as negative results that often go unreported. Additionally, the highly curated information on mutants in FgMutantDb will be shared with other databases (FungiDB, Ensembl, PhytoPath, and PHI-base) through updating reports. Here we describe the creation and potential usefulness of FgMutantDb to the F. graminearum research community, and provide a tutorial on its use. This type of database could be easily emulated for other fungal species.

Published by Elsevier Inc.

Address: National Small Grains Germplasm Research Facility, USDA-ARS, Aberdeen, ID, United States. Electronic address: [email protected].; Institute of Integrative Biology, Functional and Comparative Genomics, University of Liverpool, Liverpool L69 7ZB, UK.; Department of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, United States.; Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK; Department of Biology & Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.; Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK.; National Small Grains Germplasm Research Facility, USDA-ARS, Aberdeen, ID, United States.

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