Softness and non-spherical shape define the phase behavior and the structural properties of lysozyme in aqueous solutions.

A Baumketner, R Melnyk, M F Holovko, W Cai, D Costa, C Caccamo

Journal: The Journal of chemical physics 2016;144(1):015103

PMID: 26747821

Abstract

In this study, Boltzmann inversion is applied in conjunction with molecular dynamics simulations to derive inter-molecular potential for protein lysozyme in aqueous solution directly from experimental static structure factor. The potential has a soft repulsion at short distances and an attraction well at intermediate distances that give rise to the liquid-liquid phase separation. Moreover, Gibbs ensemble Monte Carlo simulations demonstrate that a non-spherical description of lysozyme is better suited to correctly reproduce the experimentally observed properties of such a phase separation. Our findings shed new light on the common problem in molecular and cell biology: "How to model proteins in their natural aqueous environments?"

Address: Institute for Condensed Matter Physics, NAS of Ukraine, 1 Svientsistsky St., Lviv 79011, Ukraine.; Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China.; Dipartimento di Scienze Matematiche e Informatiche, Scienze Fisiche e Scienze della Terra, Università degli Studi di Messina and Consorzio Nazionale Interuniversitario per la Fisica della Materia, Viale F. Stagno d'Alcontres 31, 98166 Messina, Italy.

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